CDS
| Accession Number | TCMCG078C12641 |
| gbkey | CDS |
| Protein Id | KAG0470512.1 |
| Location | complement(join(29134628..29134696,29145720..29145748,29145841..29146038,29146089..29146161,29147450..29147461,29147951..29147965,29187863..29187917,29188008..29188054,29188146..29188202,29188278..29188386,29196535..29196616,29204683..29204767,29204836..29204955,29205034..29205084,29205231..29205296,29205895..29205942,29206054..29206102,29206194..29206247,29206380..29206439,29206534..29206592,29206834..29206950,29207021..29207032)) |
| Organism | Vanilla planifolia |
| locus_tag | HPP92_017212 |
Protein
| Length | 488aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA633886, BioSample:SAMN14973820 |
| db_source | JADCNL010000008.1 |
| Definition | hypothetical protein HPP92_017212 [Vanilla planifolia] |
| Locus_tag | HPP92_017212 |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs |
GO:0005575
[VIEW IN EMBL-EBI] GO:0005622 [VIEW IN EMBL-EBI] GO:0005623 [VIEW IN EMBL-EBI] GO:0005634 [VIEW IN EMBL-EBI] GO:0005730 [VIEW IN EMBL-EBI] GO:0031974 [VIEW IN EMBL-EBI] GO:0031981 [VIEW IN EMBL-EBI] GO:0043226 [VIEW IN EMBL-EBI] GO:0043227 [VIEW IN EMBL-EBI] GO:0043228 [VIEW IN EMBL-EBI] GO:0043229 [VIEW IN EMBL-EBI] GO:0043231 [VIEW IN EMBL-EBI] GO:0043232 [VIEW IN EMBL-EBI] GO:0043233 [VIEW IN EMBL-EBI] GO:0044422 [VIEW IN EMBL-EBI] GO:0044424 [VIEW IN EMBL-EBI] GO:0044428 [VIEW IN EMBL-EBI] GO:0044446 [VIEW IN EMBL-EBI] GO:0044464 [VIEW IN EMBL-EBI] GO:0070013 [VIEW IN EMBL-EBI] |
Sequence
| CDS: ATGGGCATAAAGGGTTTAACGAAGCTTTTGGCCGATAACGCCCCGAAAGCCATGAAGGAGCAGAAGTTTGAGAGCTATTTCGGCCGGAAGATAGCCGTCGACGCCAGTATGAGCATCTACCAGTTTTTAATTGTGGTGGGAAGGGTTGGAACTGAAACGCTAACCAACGAGGCTGGTGACGTCACCAGCCATCTTCAAGGAATGTTCACTCGAACGATAAGGTTGCTGGAAGCAGGAATGAAGCCAGTGTATGTCTTTGATGGTCAGCCGCCTGATTTAAAGAAACAGGAGCTTGCCAAAAGATACTCTAAGAGGGATGATGCTACCAGGGAACTAGCTACAGCTGTAGAGGAAGGAAACAAGGAGGAAATTGAAAAGTTTAGCAAGAGAACTGTCAAGGTTACAAAGCAACATAACGAGGATTGCAAACAACTCCTAAGATTGATGGGTGTCCCGGTAATTGAGGCTCCATGCGAAGCTGAAGCACAATGTGCTGCGCTTTGTAAAGGTGATATGGTGTATGGTGTGGCTTCAGAAGACATGGACTCATTGACTTTTGGAGCCCCAAGATTTCTTCGCCACTTGATGGACCCAAGCTCTAAAAAGGTTCCAGTCATGGAGTTTGAAATTGCAAAGGTTTTACAGGAGCTGAATCTCACCATGGATCAATTTATTGACTTGTGCATTCTCTGTGGATGTGACTATTGTGACAGCATTAAAGGTATTGGTGGCCAAACAGCATTGAAGCTTATTCGTCAGCATGGTTCCATTGAAAATGTATTAGAAAACTTGAGCAAAGACAGGTATTATGTACCTGAGGATTGGCCGTACGAAGAAGCTCGGCGGCTCTTTAAAGATCCTTCAGTGATCTTGGAAACACCCGAACTCAAATGGACACCACCAGATGAAGAAGGCCTTGTGAACTTCTTGGTGAAGGAAAATGGTTTCAATCATGATCGTGTTGTCAAGGCAATAGAAAAGATCAGGACAGCAAAAAATAAAGCTAGCCAAGGGAGACTGGAATCTTTCTTTAAACCTGTAGCGAATGCATCTGAACCTCTTAAACGGAAGGATACATCAGCCAAGGGCTTTAGAATTGAGAACCTGGAACATGATGCAGGCACCACCGCGCTCTCCGATGCGTTTCCGATCACCATATTCATCTCCGCCGACACGGGAAAGGGCAGGGAGTTTGATGCAGATGTGGCGATGACGATGCAAAAACTCCCCTTTCATGATCGATCCGAATGGGATTGCTTCGCTGTGCTATGGAATCTAGGAATGGATAATGCGCATCTTCTTTTTGGGATGGAGGGGGTCTTGAGATATGCTGAAGGAACCCACGAGCAAAGCCCCATGGGAGAAAAAGTGGCTGTGAGACCAAGGTTTCCTGTAGAGGATGCAGTAGCCAAGGTAACAAGAGTACCTGCAGCTAAGAAATCAAAGAATGGAGAAAAGAAGAAATAG |
| Protein: MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAVDASMSIYQFLIVVGRVGTETLTNEAGDVTSHLQGMFTRTIRLLEAGMKPVYVFDGQPPDLKKQELAKRYSKRDDATRELATAVEEGNKEEIEKFSKRTVKVTKQHNEDCKQLLRLMGVPVIEAPCEAEAQCAALCKGDMVYGVASEDMDSLTFGAPRFLRHLMDPSSKKVPVMEFEIAKVLQELNLTMDQFIDLCILCGCDYCDSIKGIGGQTALKLIRQHGSIENVLENLSKDRYYVPEDWPYEEARRLFKDPSVILETPELKWTPPDEEGLVNFLVKENGFNHDRVVKAIEKIRTAKNKASQGRLESFFKPVANASEPLKRKDTSAKGFRIENLEHDAGTTALSDAFPITIFISADTGKGREFDADVAMTMQKLPFHDRSEWDCFAVLWNLGMDNAHLLFGMEGVLRYAEGTHEQSPMGEKVAVRPRFPVEDAVAKVTRVPAAKKSKNGEKKK |